Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_03859 | Not Available | + | 3943395 - 3943916 | 18710.7 |
| Trna-pro | Not Available | Not Available | + | 3943962 - 3944038 | Not Available |
| hypothetical protein | SHM7688_03861 | Not Available | - | 3944237 - 3944932 | 26579.4 |
| cold shock protein cspa | SHM7688_03862 | P55390 | - | 3945224 - 3945430 | 7244.52 |
| nad-dependent dihydropyrimidine dehydrogenase subunit pret | SHM7688_03863 | Q8X645 | + | 3945871 - 3947196 | 46266.0 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | SHM7688_03864 | Q8ZNL7 | + | 3947313 - 3948617 | 46871.9 |
| hypothetical protein | SHM7688_03865 | Not Available | - | 3948696 - 3949379 | 26448.3 |
| rut operon repressor | SHM7688_03866 | Q8X4Z7 | - | 3949579 - 3950196 | 23540.3 |
| rut operon repressor | SHM7688_03867 | Not Available | - | 3950277 - 3950918 | 23691.3 |
| n-carbamoyl-l-amino acid hydrolase | SHM7688_03868 | Q6DTN4 | + | 3951087 - 3952337 | 44968.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
