Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mreb | SHM7688_03829 | A0A0H3C7V4 | - | 3908795 - 3909835 | 36581.5 |
| ribosomal rna large subunit methyltransferase j | SHM7688_03830 | P31777 | + | 3910068 - 3910862 | 29054.4 |
| arylsulfatase | SHM7688_03831 | P25549 | + | 3911055 - 3912644 | 59628.2 |
| haloacid dehalogenase-like hydrolase | SHM7688_03832 | Not Available | + | 3912729 - 3913709 | 35687.1 |
| magnesium chelatase atpase subunit d | SHM7688_03833 | P94474 | + | 3913712 - 3914704 | 36188.7 |
| hypothetical protein | SHM7688_03834 | P9WLX4 | + | 3914729 - 3915736 | 36128.4 |
| hypothetical protein | SHM7688_03835 | Not Available | + | 3915733 - 3916275 | 19018.7 |
| vwfa-related acidobacterial domain protein | SHM7688_03836 | O51195 | + | 3916268 - 3917251 | 35304.6 |
| hypothetical protein | SHM7688_03837 | Not Available | + | 3917248 - 3918876 | 58680.3 |
| hypothetical protein | SHM7688_03838 | Not Available | + | 3918873 - 3920195 | 47563.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.