Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uracil dna glycosylase superfamily protein | SHM7688_03819 | O86222 | + | 3900231 - 3900812 | 21564.0 |
| hypothetical protein | SHM7688_03820 | Not Available | + | 3900809 - 3901600 | 27992.3 |
| glyoxylate/hydroxypyruvate reductase a | SHM7688_03821 | A8GD46 | - | 3901711 - 3902640 | 33651.6 |
| putative dioxygenase of extradiol dioxygenase family protein | SHM7688_03822 | Not Available | - | 3902637 - 3903047 | 15093.8 |
| hca operon transcriptional activator | SHM7688_03823 | Not Available | + | 3903151 - 3904014 | 30477.3 |
| hypothetical protein | SHM7688_03824 | Not Available | - | 3904100 - 3904207 | 3607.37 |
| rod shape-determining protein roda | SHM7688_03825 | P44468 | - | 3904207 - 3905346 | 41729.2 |
| sporulation-specific penicillin-binding protein | SHM7688_03826 | P44469 | - | 3905356 - 3907296 | 70976.1 |
| rod shape-determining protein mred | SHM7688_03827 | Not Available | - | 3907296 - 3907829 | 19378.7 |
| rod shape-determining protein mrec | SHM7688_03828 | Q70AN6 | - | 3907822 - 3908715 | 32488.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
