Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Dna replication initiation protein gpa | SHM7688_03916 | P03631 | + | 3995299 - 3996840 | 58721.8 |
| C | SHM7688_03917 | P69172 | + | 3996837 - 3997097 | 10081.0 |
| External scaffolding protein | SHM7688_03918 | P69486 | + | 3997094 - 3997552 | 16938.3 |
| Capsid protein | SHM7688_03919 | P03641 | + | 3997705 - 3998988 | 48485.4 |
| Major spike protein | SHM7688_03920 | P03643 | + | 3999099 - 3999626 | 19048.7 |
| 5s ribosomal rna | Not Available | Not Available | + | 230 - 339 | Not Available |
| 23s ribosomal rna (partial) | Not Available | Not Available | + | 445 - 1711 | 18.01 |
| 3-deoxy-d-manno-octulosonic acid transferase | SHM7688_00001 | P44806 | - | 357 - 1700 | 48995.8 |
| 23s ribosomal rna (partial) | Not Available | Not Available | + | 1784 - 3290 | 18.01 |
| 3-deoxy-d-manno-octulosonic acid transferase | SHM7688_00002 | Q68XV7 | - | 1697 - 3067 | 49159.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.