Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine deacetylase | SHM7688_00182 | Not Available | - | 193917 - 195080 | 41449.1 |
| glutathione import atp-binding protein gsia | SHM7688_00183 | Not Available | - | 195085 - 196905 | 66832.2 |
| oligopeptide-binding protein appa precursor | SHM7688_00184 | P06109 | + | 197204 - 198904 | 61075.9 |
| dipeptide transport system permease protein dppb | SHM7688_00185 | P42062 | + | 199016 - 200023 | 37888.5 |
| glutathione transport system permease protein gsid | SHM7688_00186 | P42063 | + | 200016 - 200927 | 33255.2 |
| cypemycin methyltransferase | SHM7688_00187 | Not Available | - | 200980 - 201741 | 27643.6 |
| virulence protein | SHM7688_00188 | Q4KLB0 | - | 201734 - 202117 | 13897.7 |
| regulatory protein of adaptative response | SHM7688_00189 | P26189 | + | 202231 - 203298 | 39278.2 |
| carboxyvinyl-carboxyphosphonate phosphorylmutase | SHM7688_00190 | Not Available | + | 203295 - 204068 | 26807.8 |
| hypothetical protein | SHM7688_00191 | Q6NDP1 | - | 204344 - 206020 | 61223.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.