Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00142 | Not Available | + | 146155 - 146670 | 18366.2 |
| Trna-ser | Not Available | Not Available | + | 146766 - 146855 | Not Available |
| glutaredoxin-like protein nrdh | SHM7688_00144 | Not Available | + | 147649 - 147870 | 7854.32 |
| putative nrdi-like protein | SHM7688_00145 | A1BA96 | + | 147878 - 148303 | 15321.3 |
| ribonucleoside-diphosphate reductase subunit alpha 2 | SHM7688_00146 | P0A5W9 | + | 148285 - 150408 | 79665.4 |
| ribonucleoside-diphosphate reductase subunit beta nrdf2 | SHM7688_00147 | P9WH70 | + | 150423 - 151394 | 37009.4 |
| phosphoribosyl-atp pyrophosphohydrolase | SHM7688_00148 | Not Available | + | 151394 - 151780 | 14143.9 |
| hypothetical protein | SHM7688_00149 | Not Available | - | 151926 - 152147 | 8083.07 |
| 3-ketosteroid-9-alpha-hydroxylase reductase subunit | SHM7688_00150 | P9WNE8 | - | 152443 - 153522 | 39000.5 |
| naphthalene 1,2-dioxygenase subunit alpha | SHM7688_00151 | F0KFI5 | - | 153528 - 154754 | 45681.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.