Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00122 | Not Available | + | 122857 - 123843 | 37229.1 |
| isocitrate dehydrogenase | SHM7688_00123 | P16100 | - | 123971 - 126187 | 77845.8 |
| aerobic glycerol-3-phosphate dehydrogenase | SHM7688_00124 | Q2YIQ2 | - | 126367 - 127950 | 59021.4 |
| glycerol-3-phosphate regulon repressor | SHM7688_00125 | P44784 | + | 128096 - 128854 | 27048.2 |
| coniferyl aldehyde dehydrogenase | SHM7688_00126 | Q9I6C8 | + | 129078 - 130538 | 53469.8 |
| sensors of blue-light using fad | SHM7688_00127 | Not Available | - | 130592 - 131002 | 15744.7 |
| Trna-arg | Not Available | Not Available | + | 131272 - 131349 | Not Available |
| phosphonate utilization associated putative membrane protein | SHM7688_00129 | Not Available | + | 131690 - 132529 | 29487.8 |
| nadp-dependent glyceraldehyde-3-phosphate dehydrogenase | SHM7688_00130 | Q92UV7 | - | 132643 - 134106 | 53271.8 |
| phosphonoacetate hydrolase | SHM7688_00131 | Q50HR6 | - | 134111 - 135355 | 45405.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.