Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| long-chain-fatty-acid--coa ligase | SHM7688_00112 | Q8VZF1 | + | 113886 - 115514 | 58837.6 |
| hypothetical protein | SHM7688_00113 | Not Available | + | 115640 - 116350 | 26360.6 |
| tyrosine recombinase xerd | SHM7688_00114 | Q8YJD9 | + | 116347 - 117261 | 33352.3 |
| 2-(hydroxymethyl)glutarate dehydrogenase | SHM7688_00115 | Q55702 | - | 117371 - 118333 | 33808.8 |
| arylmalonate decarboxylase | SHM7688_00116 | Not Available | - | 118422 - 119168 | 25829.0 |
| putative peptidase | SHM7688_00117 | O31689 | - | 119173 - 120342 | 42294.4 |
| diaminopropionate ammonia-lyase | SHM7688_00118 | Not Available | - | 120335 - 121387 | 36092.9 |
| leucine-responsive regulatory protein | SHM7688_00119 | P55658 | + | 121560 - 122027 | 17538.0 |
| hypothetical protein | SHM7688_00120 | Not Available | - | 122088 - 122372 | 9899.22 |
| hypothetical protein | SHM7688_00121 | Not Available | - | 122480 - 122617 | 5103.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.