Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative domain 1 | SHM7688_00102 | Not Available | - | 104419 - 104928 | 18888.6 |
| putative domain 1 | SHM7688_00103 | Not Available | - | 104932 - 105354 | 14890.8 |
| zn(ii)-responsive regulator of znta | SHM7688_00104 | Not Available | + | 105471 - 105851 | 15182.2 |
| zn(ii)-responsive regulator of znta | SHM7688_00105 | Not Available | + | 106140 - 106541 | 16070.2 |
| acyl-coa dehydrogenase | SHM7688_00106 | Not Available | + | 106589 - 108364 | 63888.5 |
| hypothetical protein | SHM7688_00107 | Not Available | + | 108425 - 108637 | 8236.8 |
| disulfide-bond oxidoreductase yfcg | SHM7688_00108 | A0A6J4B5J2 | + | 108675 - 109313 | 24080.2 |
| putative acyltransferase | SHM7688_00109 | O53871 | + | 109339 - 110550 | 42914.8 |
| fatty acid oxidation complex subunit alpha | SHM7688_00110 | A1S7L6 | + | 110575 - 112776 | 78857.2 |
| hypothetical protein | SHM7688_00111 | Not Available | - | 112863 - 113531 | 23933.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.