Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fe(3+) ions import atp-binding protein fbpc 2 | SHM7688_00062 | Q6D2F6 | - | 63083 - 64213 | 41675.4 |
| hypothetical protein | SHM7688_00063 | Not Available | - | 64233 - 65618 | 48897.1 |
| dna alkylation repair enzyme | SHM7688_00064 | O07541 | - | 65712 - 66866 | 42356.6 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | SHM7688_00065 | Not Available | - | 66877 - 67656 | 26323.7 |
| hom_end-associated hint | SHM7688_00066 | Not Available | + | 67829 - 68851 | 36821.6 |
| peptide chain release factor 3 | SHM7688_00067 | A1AME1 | + | 68905 - 70512 | 59842.9 |
| hypothetical protein | SHM7688_00068 | Not Available | + | 70560 - 71315 | 28372.3 |
| hypothetical protein | SHM7688_00069 | Not Available | + | 71312 - 72280 | 36168.1 |
| atp-dependent rna helicase rhle | SHM7688_00070 | Not Available | + | 72437 - 73846 | 51941.2 |
| ribonuclease j 1 | SHM7688_00071 | M4MR97 | - | 73971 - 75635 | 60193.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.