Shewanella denitrificans OS217 str. OS-217

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella denitrificans OS217 str. OS-217 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe is a heterotroph, utilizing organic compounds as its energy source, and is capable of thriving in aquatic environments. Its optimal growth temperature is approximately 20.0 degrees Celsius, indicating a preference for cooler conditions often found in natural water bodies. As a facultative anaerobe, S. denitrificans OS217 str. OS-217 can adapt to varying oxygen levels, allowing it to survive both in the presence and absence of oxygen. This flexibility in oxygen utilization may facilitate its growth in diverse aquatic ecosystems that experience fluctuating oxygen conditions, such as estuaries or sediments where oxygen gradients are present. Unique to its ecological role, S. denitrificans OS217 str. OS-217 contributes to biogeochemical cycles, particularly in the denitrification process, where it can reduce nitrate to nitrogen gas under anaerobic conditions. This capability not only highlights its potential importance in nitrogen cycling within aquatic habitats but also suggests its relevance in bioremediation efforts aimed at mitigating nitrogen pollution in freshwater and marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella denitrificans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella denitrificans OS217 str. OS-217
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Shewanella denitrificans OS217 str. OS-217

Accession NumberNC_007954.1

Gene Summary

Adenine Count

1249186 bp

Thymine Count

1244281 bp

Guanine Count

1023553 bp

Cytosine Count

1028886 bp

Genome Length

4545906 bp

Protein-coding Genes

3819 genes

Non-Coding Genes

153 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
oxygen-dependent coproporphyrinogen oxidaseSDEN_RS00150Not Available+35954 - 3687134314.4
group ii truncated hemoglobinSDEN_RS00155Not Available-36879 - 3731316612.8
amidohydrolaseSDEN_RS00160Not Available+37525 - 3891950647.4
amidohydrolase family proteinSDEN_RS00165Not Available+38937 - 4022945728.6
shikimate dehydrogenaseSDEN_RS00170Not Available+40277 - 4109829153.8
duf1488 domain-containing proteinSDEN_RS00175Not Available+41134 - 414009764.47
gamma carbonic anhydrase family proteinSDEN_RS00180Not Available-41465 - 4201919572.6
16s ribosomal rnaNot AvailableNot Available+42587 - 44131Not Available
23s ribosomal rnaNot AvailableNot Available+44667 - 47571Not Available
5s ribosomal rnaNot AvailableNot Available+47825 - 47940Not Available

Displaying genes 71 – 80 of 3972 in total

Pathways

141 pathways

Metabolites

526 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 526 metabolites