Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis alaskensis |
| Strain | RB2256 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | 2 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Oligotroph - Heterotroph |
| Pathogenicity | No |
Genome Summary
Sphingopyxis alaskensis RB2256
Accession NumberNC_008048.1
Gene Summary
Adenine Count
579938 bp
Thymine Count
574094 bp
Guanine Count
1094262 bp
Cytosine Count
1096876 bp
Genome Length
3345170 bp
Protein-coding Genes
3231 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | SALA_RS01410 | Not Available | - | 282062 - 282697 | 22991.1 |
| nepr family anti-sigma factor | SALA_RS01415 | Not Available | - | 282697 - 282954 | 9116.72 |
| bluf domain-containing protein | SALA_RS16365 | Not Available | + | 283107 - 283532 | 15698.8 |
| sigma-70 family rna polymerase sigma factor | SALA_RS01425 | B3Q6P8 | + | 283576 - 284211 | 23160.8 |
| response regulator | SALA_RS01430 | Not Available | - | 284220 - 285014 | 28593.9 |
| sensor histidine kinase | SALA_RS17555 | B2SB67 | + | 285198 - 286742 | 57698.2 |
| ligase-associated dna damage response exonuclease | SALA_RS01440 | B1ZZL9 | + | 286755 - 287768 | 37193.5 |
| cisplatin damage response atp-dependent dna ligase | SALA_RS01445 | A7HID3 | + | 287765 - 289417 | 60881.8 |
| superoxide dismutase | SALA_RS01450 | P09213 | + | 289617 - 290231 | 22539.2 |
| l-serine ammonia-lyase | SALA_RS01455 | O86564 | + | 290401 - 291780 | 48306.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.