Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Not Available
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Cod
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238

Accession NumberNC_011311.1

Gene Summary

Adenine Count

26194 bp

Thymine Count

23871 bp

Guanine Count

15939 bp

Cytosine Count

17536 bp

Genome Length

83540 bp

Protein-coding Genes

73515 genes

Non-Coding Genes

10025 genes

# of Chromosomes/Plasmids

6

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
aspartate kinase	VSAL_RS03550	P53553	+	706221 - 707390	42353.6
carbon storage regulator csra	VSAL_RS03555	B6ENI1	+	707472 - 707672	7163.82
Trna-ser	Not Available	Not Available	+	707891 - 707983	Not Available
Trna-arg	Not Available	Not Available	+	708037 - 708113	Not Available
Trna-ser	Not Available	Not Available	+	708186 - 708278	Not Available
Trna-arg	Not Available	Not Available	+	708331 - 708407	Not Available
Trna-arg	Not Available	Not Available	+	708474 - 708550	Not Available
Trna-arg	Not Available	Not Available	+	708617 - 708693	Not Available
Trna-arg	Not Available	Not Available	+	708760 - 708836	Not Available
Trna-arg	Not Available	Not Available	+	708902 - 708978	Not Available

Displaying genes 831 – 840 of 4514 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da
BASm0001697	(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4		Not available	Average132.1146Da Monoisotopic132.042258744Da
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002157	7-cyano-7-deazaguanineC7H5N5O		Not available	Average175.1475Da Monoisotopic175.0494098Da
BASm0002198	beta-D-ribofuranoseC5H10O5		`50-69-1`	Average150.1299Da Monoisotopic150.05282343Da
BASm0002305	(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4		Not available	Average145.135Da Monoisotopic145.0506324Da

Displaying 1–10 of 86 metabolites