Parvularcula bermudensis HTCC2503

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Parvularculales

Family

Parvularculaceae

Genus

Parvularcula

Description

Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) is an obligately aerobic, NaCl-requiring, chemoheterotrophic Gram-negative bacterium isolated from the Bermuda Atlantic Time Series Station in the western Sargasso Sea, Atlantic Ocean. The cells are weakly motile short rods (sometimes coccoid), 0.4-1.3 um in diameter and 0.6-1.8 um in length, that divided by binary fission. It has a short flagellum with a mean length of 2.4 um and a hook is clearly visible at one end of flagella detached from cells. The colonies on marine agar are very small (0.3-0.8 mm in diameter), yellowish-brown and very hard . The temperature range for growth is 10-37 degrees Celsius, with optimum growth at 30 degrees Celsius. No growth is observed at 4 or 44 degrees Celsius. Extended incubation of up to 40 days is required at 10 degrees before growth is observed. The pH range for growth is 6.0-9.0, with optimum growth at pH 8.0. No growth is detected at pH 5.5 or 9.5. P. bermudensis is moderately halophilic and shows good growth at NaCl concentrations of 0.75-25% (w/v) and optimal growth at 3.0% (w/v). It produced carotenoid pigments with spectral absorbance peaks at 321 and 465 nm, but no bacteriochlorophyll a. P. bermudensis reduces nitrate to nitrite, but not nitrite to N2, and utilizes some pentoses, hexoses, sugar alcohols, oligosaccharides and amino acids as sole carbon sources, but C1-C4 compounds and organic acids are not utilized as sole carbon sources. It is susceptible to chloramphenicol, carbenicillin, tetracycline, streptomycin, puromycin, erythromycin and rifampicin. However, it is resistant to nalidixic acid, kanamycin, vancomycin, ampicillin, benzylpenicillin, gentamicin and cycloheximide. (Adapted from PMID: 12892122). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderParvularculales
FamilyParvularculaceae
GenusParvularcula
SpeciesParvularcula bermudensis
StrainHTCC2503

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Parvularcula bermudensis HTCC2503
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Parvularcula bermudensis HTCC2503

Accession NumberNC_014414.1

Gene Summary

Adenine Count

574003 bp

Thymine Count

568010 bp

Guanine Count

879011 bp

Cytosine Count

881619 bp

Genome Length

2902643 bp

Protein-coding Genes

2634 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
helix-turn-helix domain-containing proteinPB2503_RS13510Not Available-2891621 - 289203415297.3
nad-dependent epimerase/dehydratase family proteinPB2503_RS13515Not Available-2892214 - 289341644714.1
phosphatase pap2 family proteinPB2503_RS13520Not Available-2893511 - 289419724915.8
eama family transporterPB2503_RS13525Not Available-2894222 - 289464715020.6
efflux rnd transporter permease subunitPB2503_RS13530Not Available-2894679 - 2897798110504.0
efflux rnd transporter periplasmic adaptor subunitPB2503_RS13535Not Available-2897795 - 289894039307.8
tolc family proteinPB2503_RS13540Not Available-2898937 - 290024745284.8
response regulator transcription factorPB2503_RS13545Not Available+2900385 - 290105924697.3
sensor histidine kinasePB2503_RS14180Not Available+2901040 - 290240748797.1

Displaying genes 2691 – 2699 of 2699 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

48 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da

Displaying 1–10 of 48 metabolites