Phocaeicola plebeius

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius is a Gram-negative, non-sporulating rod-shaped bacterium characterized as a chemoheterotroph, thriving in anaerobic environments. This microbe is primarily found within the intestinal microflora of animals, where it plays a role in the digestive processes and overall gut health. As an anaerobe, Phocaeicola plebeius is adapted to environments devoid of oxygen, which is typical of the intestinal tract, allowing it to efficiently utilize organic compounds derived from the host's diet. The presence of Phocaeicola plebeius in the gut microbiome suggests a potential interaction with other microbial species, contributing to the complex ecosystem of the intestinal environment. By participating in the fermentation of carbohydrates and the breakdown of proteins, this bacterium may influence nutrient absorption and gut health in its host. Furthermore, its classification within the intestinal microflora highlights its potential role in maintaining the balance of microbial communities, which is essential for preventing dysbiosis and supporting the immune system. Overall, Phocaeicola plebeius exemplifies the intricate relationships between intestinal microorganisms and their hosts, emphasizing the importance of anaerobic bacteria in sustaining gut homeostasis and aiding in digestion.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius

Accession NumberQSJG00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
1_nc_021788: spfh domain / band 7 familyDXB87_01520Not Available-320872 - 32168130907.1
1_nc_021804: hypothetical proteinDXB87_01525Not Available-321843 - 32258628323.0
Hypothetical proteinDXB87_01530Not Available-322593 - 32287110419.8
1_nc_021804: hypothetical proteinDXB87_01535Not Available-322875 - 32330316658.8
hypothetical proteinDXB87_01540Not Available-323305 - 32360411408.8
hypotheticalDXB87_01545Not Available-323591 - 32420621750.1
hypothetical proteinDXB87_01550Not Available-324203 - 3244278510.37
Putative rect recombination proteinDXB87_01555Not Available-324427 - 32533533602.0
hypothetical proteinDXB87_01560Not Available-325332 - 32630037510.4
hypothetical proteinDXB87_01565Not Available-326372 - 32707327222.3

Displaying genes 31 – 40 of 15642 in total

Pathways

165 pathways

Metabolites

349 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 349 metabolites