Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyltransferase | DXB87_00735 | Not Available | Positive | 188980 - 190131 | 44015.9 |
| cytidine deaminase | DXB87_00740 | Not Available | Negative | 190138 - 190617 | 17756.2 |
| lysm peptidoglycan-binding domain-containing protein | DXB87_00745 | Not Available | Positive | 190759 - 191649 | 34460.5 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DXB87_00750 | Not Available | Negative | 191655 - 192128 | 18188.2 |
| dmt family transporter | DXB87_00755 | Not Available | Negative | 192161 - 193057 | 32595.7 |
| carboxylating nicotinate-nucleotide diphosphorylase | DXB87_00760 | Not Available | Positive | 193169 - 194023 | 31483.5 |
| duf4923 family protein | DXB87_00765 | Not Available | Positive | 194091 - 194705 | 21345.6 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DXB87_00770 | Not Available | Negative | 194773 - 195894 | 42479.8 |
| histidinol-phosphate transaminase | DXB87_00775 | Not Available | Negative | 195891 - 196940 | 40190.1 |
| histidinol dehydrogenase | DXB87_00780 | Not Available | Negative | 196943 - 198220 | 46318.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

