Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius
Accession NumberQSJG00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotate dehydrogenase-like protein | DXB87_06575 | Not Available | - | 1429574 - 1430551 | 35728.6 |
| yggs family pyridoxal phosphate-dependent enzyme | DXB87_06580 | Not Available | - | 1430565 - 1431233 | 25180.2 |
| duf4494 domain-containing protein | DXB87_06585 | Not Available | - | 1431252 - 1431734 | 18232.6 |
| fucose isomerase | DXB87_06590 | Not Available | - | 1431815 - 1433053 | 46285.1 |
| pyridoxal phosphate-dependent aminotransferase | DXB87_06595 | Not Available | + | 1433258 - 1434460 | 45069.1 |
| abc transporter permease | DXB87_06600 | Not Available | + | 1434457 - 1435707 | 46470.9 |
| proline--trna ligase | DXB87_06605 | Not Available | + | 1435798 - 1437288 | 56961.1 |
| leucyl/phenylalanyl-trna--protein transferase | DXB87_06610 | Not Available | - | 1437365 - 1438006 | 24465.7 |
| aaa family atpase | DXB87_06615 | Not Available | - | 1438017 - 1440233 | 83312.9 |
| atp-dependent clp protease adaptor clps | DXB87_06620 | Not Available | - | 1440248 - 1440556 | 11843.2 |
Pathways
165 pathways
Fatty Acid Oxidation (Octanoate)
Fatty Acid Oxidation (Octanoate)
Fatty Acid Oxidation (Butanoate)
Fatty Acid Oxidation (Butanoate)
Fatty Acid Oxidation
Fatty Acid Oxidation
Fatty Acid Oxidation (Myristate)
Fatty Acid Oxidation (Myristate)
Fatty Acid Oxidation (Steareate)
Fatty Acid Oxidation (Steareate)
Fatty Acid Oxidation (Laurate)
Fatty Acid Oxidation (Laurate)
D-Glutamine and D-Glutamate Metabolism
D-Glutamine and D-Glutamate Metabolism
Lipoic Acid Metabolism
Lipoic Acid Metabolism
