Dictyoglomus thermophilum H-6-12

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Dictyoglomota

Class

Dictyoglomia

Order

Dictyoglomales

Family

Dictyoglomaceae

Genus

Dictyoglomus

Description

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) is a Gram-negative, obligately anaerobic and extremely thermophilic bacterium isolated from a slightly alkaline hot spring (Tsuetae Hot Spring) in Kumamoto Prefecture, Japan. It has an optimum temperature for growth of 78 degrees Celsius and forms a characteristic cell-association structure called 'rotund bodies'. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumDictyoglomota
ClassDictyoglomia
OrderDictyoglomales
FamilyDictyoglomaceae
GenusDictyoglomus
SpeciesDictyoglomus thermophilum
StrainH-6-12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dictyoglomus thermophilum H-6-12
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature78
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Dictyoglomus thermophilum H-6-12

Accession NumberNC_011297.1

Gene Summary

Adenine Count

659799 bp

Thymine Count

638869 bp

Guanine Count

339783 bp

Cytosine Count

321536 bp

Genome Length

1959987 bp

Protein-coding Genes

1895 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
atp synthase subunit cDICTH_RS09000Not Available-1817648 - 18179028827.21
f0f1 atp synthase subunit aDICTH_RS09005Not Available-1817918 - 181858024522.5
hypothetical proteinDICTH_RS09010Not Available-1818564 - 181890513050.4
atpz/atpi family proteinDICTH_RS09015Not Available-1818880 - 18190867936.07
trna (cytidine(34)-2'-o)-methyltransferaseDICTH_RS09020Not Available-1819105 - 181956617785.4
gatb/yqey domain-containing proteinDICTH_RS09025Not Available-1819563 - 182001817622.5
flavodoxin family proteinDICTH_RS09030Not Available-1820021 - 182050318869.8
acetoin utilization protein acucDICTH_RS09035Not Available-1820536 - 182148035350.9
impact family proteinDICTH_RS09040Not Available-1821467 - 182206022811.8
s1c family serine proteaseDICTH_RS09045Not Available-1822057 - 182301334334.3

Displaying genes 1821 – 1830 of 1950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

38 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm0003107S-inosyl-L-homocysteineC14H19N5O6SChemical structure of S-inosyl-L-homocysteineNot available
Average385.396Da
Monoisotopic385.1056041Da

Displaying 1–10 of 38 metabolites