Symbiobacterium thermophilum IAM 14863

Gram-positiveRodNon-motileMicroaerophilic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Symbiobacteriaceae

Genus

Symbiobacterium

Description

Symbiobacterium thermophilum is an uncultivable bacterium isolated from compost that depends on microbial commensalism. The Gram-stain result indicates that S.thermophilum is Gram-negative whereas the results of the 16S ribosomal DNA phylogenic study indicates that it belongs to the Gram-positive group. Proteins associated with the S-layer have been identified in S.thermophilum and Gram variability was observed in several S-layer-coated bacteria.(From http://www.expasy.org/sprot/hamap/SYMTH.html) (BacMap)

Taxonomy

Kingdom	Bacillati
Phylum	Bacillota
Class	Clostridia
Order	Eubacteriales
Family	Symbiobacteriaceae
Genus	Symbiobacterium
Species	Symbiobacterium thermophilum
Strain	IAM 14863

Profile

Physiology
Gram staining properties	Positive
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Microaerophilic
Optimal temperature	60
Temperature range	Thermophilic
Habitat	Terrestrial
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Symbiobacterium thermophilum IAM 14863

Accession NumberNC_006177.1

Gene Summary

Adenine Count

559574 bp

Thymine Count

557753 bp

Guanine Count

1223020 bp

Cytosine Count

1225788 bp

Genome Length

3566135 bp

Protein-coding Genes

3265 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
Trna-ser	Not Available	Not Available	+	13761 - 13851	Not Available
trna adenosine(34) deaminase tada	STH_RS00060	Not Available	+	13929 - 14387	16976.6
peptide abc transporter substrate-binding protein	STH_RS00065	Not Available	+	14470 - 16176	59991.7
dna polymerase iii subunit gamma/tau	STH_RS00070	Not Available	+	16249 - 17961	61606.1
ybab/ebfc family nucleoid-associated protein	STH_RS00075	Not Available	+	17961 - 18290	11734.4
recombination mediator recr	STH_RS00080	Not Available	+	18294 - 18893	22090.9
glutamate--trna ligase	STH_RS00085	Not Available	+	19233 - 20681	55493.5
16s ribosomal rna	Not Available	Not Available	+	21146 - 22710	Not Available
23s ribosomal rna	Not Available	Not Available	+	22932 - 25876	Not Available
5s ribosomal rna	Not Available	Not Available	+	25927 - 26034	Not Available

Displaying genes 11 – 20 of 3383 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001717	fumarateC4H2O4		Not available	Average114.0563Da Monoisotopic113.9953086Da
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0001921	(S)-3-methyl-2-oxopentanoateC6H9O3		`1460-34-0`	Average129.1339Da Monoisotopic129.0551692Da
BASm0002198	beta-D-ribofuranoseC5H10O5		`50-69-1`	Average150.1299Da Monoisotopic150.05282343Da
BASm0002243	S-methyl-5'-thioinosineC11H14N4O4S		Not available	Average298.32Da Monoisotopic298.0735761Da
BASm0002307	(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4		Not available	Average147.1491Da Monoisotopic147.06573384Da

Displaying 1–10 of 66 metabolites