Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | TM1040_RS00390 | Not Available | + | 90028 - 90330 | 11434.7 |
| hypothetical protein | TM1040_RS00395 | Not Available | + | 90406 - 92100 | 60809.5 |
| glycosyltransferase | TM1040_RS19840 | Not Available | - | 92309 - 93592 | 48081.5 |
| glycosyltransferase | TM1040_RS00400 | Not Available | - | 93592 - 95853 | 83090.6 |
| class i sam-dependent methyltransferase | TM1040_RS19635 | Not Available | - | 96000 - 97055 | 39398.1 |
| s8 family serine peptidase | TM1040_RS00410 | Not Available | - | 97529 - 100117 | 90404.2 |
| abc transporter atp-binding protein | TM1040_RS00415 | Not Available | - | 100442 - 102199 | 64225.7 |
| hypothetical protein | TM1040_RS00420 | Not Available | + | 103138 - 103335 | 7181.59 |
| lps export abc transporter periplasmic protein lptc | TM1040_RS19855 | Not Available | + | 103394 - 103981 | 21579.6 |
| hypothetical protein | TM1040_RS19860 | Not Available | - | 104093 - 104752 | 25039.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.