Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system dna-binding domain-containing protein | TM1040_RS00295 | Not Available | - | 68214 - 70589 | 88701.7 |
| type iv secretion system protein virb3 | TM1040_RS00300 | Not Available | - | 70579 - 70857 | 10441.1 |
| trbc/virb2 family protein | TM1040_RS00305 | Not Available | - | 70850 - 71143 | 10018.6 |
| lytic transglycosylase domain-containing protein | TM1040_RS00310 | Not Available | - | 71140 - 71754 | 21913.0 |
| hypothetical protein | TM1040_RS00315 | Not Available | - | 71798 - 72151 | 13034.5 |
| hypothetical protein | TM1040_RS00320 | Not Available | + | 72385 - 72615 | 8562.91 |
| duf6552 family protein | TM1040_RS20435 | Not Available | - | 73530 - 73781 | 8924.08 |
| sdr family oxidoreductase | TM1040_RS00335 | Not Available | - | 73771 - 74475 | 24617.4 |
| lysr substrate-binding domain-containing protein | TM1040_RS00340 | Not Available | + | 74574 - 75452 | 31559.8 |
| hypothetical protein | TM1040_RS00345 | Not Available | - | 75610 - 76305 | 26189.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.