Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system protein | TM1040_RS00250 | Not Available | - | 60669 - 61748 | 37487.2 |
| hypothetical protein | TM1040_RS00255 | Not Available | - | 61761 - 62174 | 15683.4 |
| hypothetical protein | TM1040_RS00260 | Not Available | - | 62171 - 62365 | 6995.36 |
| atpase, t2ss/t4p/t4ss family | TM1040_RS00265 | Not Available | - | 62362 - 63348 | 35815.3 |
| trbi/virb10 family protein | TM1040_RS00270 | Not Available | - | 63353 - 64732 | 49409.0 |
| trbg/virb9 family p-type conjugative transfer protein | TM1040_RS00275 | Not Available | - | 64729 - 65424 | 25660.3 |
| virb8 family protein | TM1040_RS00280 | Not Available | - | 65427 - 66080 | 24387.0 |
| type iv secretion system protein | TM1040_RS00285 | Not Available | - | 66097 - 66906 | 29080.3 |
| lytic transglycosylase domain-containing protein | TM1040_RS00290 | Not Available | - | 66906 - 68060 | 41218.1 |
| hypothetical protein | TM1040_RS20155 | Not Available | - | 68050 - 68217 | 5672.92 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.