Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome | TM1040_RS02635 | Not Available | - | 468998 - 469465 | 16503.1 |
| hypothetical protein | TM1040_RS19900 | Not Available | + | 470059 - 470502 | 16146.3 |
| yaii/yqxd family protein | TM1040_RS02640 | Not Available | - | 470506 - 470958 | 16133.4 |
| si-specific nad(p)(+) transhydrogenase | TM1040_RS02645 | Not Available | - | 470955 - 472460 | 55674.7 |
| s-formylglutathione hydrolase | TM1040_RS02650 | Not Available | - | 472465 - 473298 | 30513.7 |
| cupin domain-containing protein | TM1040_RS02655 | Not Available | + | 473527 - 473868 | 12989.2 |
| aec family transporter | TM1040_RS02660 | Not Available | - | 473885 - 474808 | 32109.2 |
| tetr/acrr family transcriptional regulator | TM1040_RS02665 | Not Available | + | 475100 - 475750 | 24221.8 |
| arsr/smtb family transcription factor | TM1040_RS02670 | Not Available | + | 475895 - 476599 | 25051.5 |
| duf2794 domain-containing protein | TM1040_RS02675 | Not Available | + | 476650 - 476988 | 13064.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.