Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf1403 family protein | TM1040_RS02435 | Not Available | - | 422223 - 423107 | 31653.2 |
| integrase | TM1040_RS02440 | Not Available | + | 423297 - 424160 | 32216.5 |
| parb/repb/spo0j family partition protein | TM1040_RS02445 | Not Available | - | 424166 - 425248 | 39216.6 |
| aaa family atpase | TM1040_RS02450 | Not Available | - | 425250 - 426620 | 51146.6 |
| replication initiation protein | TM1040_RS02455 | Not Available | + | 427302 - 428594 | 48390.3 |
| malonate--coa ligase | TM1040_RS02460 | Not Available | - | 428668 - 430182 | 55149.0 |
| arac family transcriptional regulator | TM1040_RS02465 | Not Available | + | 430821 - 431840 | 37056.9 |
| nad(p)h-binding protein | TM1040_RS02470 | Not Available | + | 431965 - 432822 | 30482.2 |
| duf4345 domain-containing protein | TM1040_RS02475 | Not Available | + | 432819 - 433247 | 14758.7 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit f | TM1040_RS02480 | Not Available | - | 433541 - 434764 | 45454.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.