Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| calcium-binding protein | TM1040_RS19675 | Not Available | - | 387083 - 388558 | 50883.9 |
| sarcosine oxidase subunit beta family protein | TM1040_RS02290 | Not Available | + | 389009 - 390259 | 45589.4 |
| sarcosine oxidase subunit delta | TM1040_RS02295 | Not Available | + | 390288 - 390584 | 11396.4 |
| sarcosine oxidase subunit alpha family protein | TM1040_RS02300 | Not Available | + | 390581 - 393535 | 106523.0 |
| sarcosine oxidase subunit gamma | TM1040_RS02305 | Not Available | + | 393528 - 394079 | 20007.2 |
| glxa family transcriptional regulator | TM1040_RS02310 | Not Available | - | 394091 - 395104 | 36701.1 |
| lysr family transcriptional regulator | TM1040_RS02315 | Not Available | - | 395104 - 396009 | 32679.4 |
| aldehyde dehydrogenase family protein | TM1040_RS02320 | Not Available | + | 396121 - 397569 | 51221.8 |
| membrane dipeptidase | TM1040_RS02325 | Not Available | + | 397569 - 398549 | 36963.6 |
| bcct family transporter | TM1040_RS02330 | Not Available | + | 398618 - 400162 | 54723.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.