Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | TM1040_RS02140 | Not Available | + | 355156 - 356160 | 36168.2 |
| gfo/idh/moca family protein | TM1040_RS02145 | Not Available | - | 356157 - 357290 | 40674.2 |
| tim barrel protein | TM1040_RS02150 | Not Available | - | 357303 - 358196 | 32690.5 |
| gfo/idh/moca family protein | TM1040_RS02155 | Not Available | - | 358216 - 359319 | 39856.4 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | TM1040_RS02160 | Not Available | + | 359443 - 361311 | 67354.7 |
| 5-dehydro-2-deoxygluconokinase | TM1040_RS02165 | Not Available | + | 361412 - 362386 | 34002.2 |
| 5-deoxy-glucuronate isomerase | TM1040_RS02170 | Not Available | + | 362399 - 363241 | 31526.2 |
| class ii fructose-bisphosphate aldolase | TM1040_RS02175 | Not Available | + | 363238 - 364068 | 29258.9 |
| inositol 2-dehydrogenase | TM1040_RS02180 | Not Available | + | 364070 - 365059 | 35327.9 |
| yeih family protein | TM1040_RS02185 | Not Available | - | 365203 - 366228 | 35663.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.