Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4153 domain-containing protein | TM1040_RS02090 | Not Available | + | 344066 - 345592 | 56563.1 |
| response regulator transcription factor | TM1040_RS02095 | Not Available | + | 345607 - 346299 | 25177.5 |
| hamp domain-containing sensor histidine kinase | TM1040_RS02100 | Not Available | + | 346284 - 347858 | 56939.4 |
| alkene reductase | TM1040_RS02105 | Not Available | - | 347840 - 348940 | 39190.5 |
| lysr family transcriptional regulator | TM1040_RS02110 | Not Available | + | 349061 - 349960 | 33163.0 |
| lysr substrate-binding domain-containing protein | TM1040_RS02115 | Not Available | - | 350035 - 350931 | 33096.2 |
| maoc family dehydratase n-terminal domain-containing protein | TM1040_RS02120 | Not Available | + | 351039 - 351881 | 31262.3 |
| atp-binding cassette domain-containing protein | TM1040_RS02125 | Not Available | - | 352034 - 352822 | 28067.0 |
| abc transporter permease | TM1040_RS02130 | Not Available | - | 352824 - 353945 | 39850.0 |
| sugar abc transporter substrate-binding protein | TM1040_RS02135 | Not Available | - | 354019 - 354969 | 33387.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.