Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase (nadp(+)) | TM1040_RS02040 | Not Available | + | 334135 - 335655 | 53141.9 |
| hypothetical protein | TM1040_RS02045 | Not Available | + | 335825 - 336139 | 11008.9 |
| paraquat-inducible protein a | TM1040_RS02050 | Not Available | + | 336360 - 336977 | 22017.7 |
| paraquat-inducible protein a | TM1040_RS02055 | Not Available | + | 336944 - 337579 | 23060.1 |
| mlad family protein | TM1040_RS02060 | Not Available | + | 337576 - 339660 | 73654.2 |
| membrane integrity-associated transporter subunit pqic | TM1040_RS02065 | Not Available | + | 339662 - 340219 | 19464.0 |
| abc transporter atp-binding protein | TM1040_RS02070 | Not Available | - | 340248 - 340973 | 26216.9 |
| sulfate abc transporter permease subunit cysw | TM1040_RS02075 | Not Available | - | 340970 - 341773 | 28739.1 |
| sulfate abc transporter permease subunit cyst | TM1040_RS02080 | Not Available | - | 341777 - 342667 | 31968.1 |
| thiosulfate abc transporter substrate-binding protein cysp | TM1040_RS02085 | Not Available | - | 342686 - 343723 | 37493.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.