Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rok family protein | TM1040_RS01745 | Not Available | + | 265413 - 266627 | 41826.3 |
| m20 family metallopeptidase | TM1040_RS01750 | Not Available | + | 266624 - 267874 | 44359.7 |
| substrate-binding domain-containing protein | TM1040_RS01755 | Not Available | + | 267890 - 268942 | 36447.8 |
| abc transporter permease | TM1040_RS01760 | Not Available | + | 269124 - 270077 | 33201.8 |
| alanine racemase | TM1040_RS01765 | Not Available | + | 270091 - 271302 | 42843.9 |
| atp-binding cassette domain-containing protein | TM1040_RS01770 | Not Available | + | 271299 - 272042 | 26503.9 |
| 3-hydroxybutyrate dehydrogenase | TM1040_RS01775 | Not Available | - | 272076 - 272879 | 27544.1 |
| amp-binding protein | TM1040_RS01780 | Not Available | - | 272876 - 274402 | 54658.8 |
| acetyl-coa acetyltransferase | TM1040_RS01785 | Not Available | - | 274399 - 275595 | 41767.5 |
| luxr c-terminal-related transcriptional regulator | TM1040_RS01790 | Not Available | + | 275643 - 276200 | 20921.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.