Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cher family methyltransferase | TM1040_RS01645 | Not Available | + | 246458 - 247288 | 31934.1 |
| chemotaxis protein ched | TM1040_RS01650 | Not Available | + | 247293 - 247832 | 19174.2 |
| chemotaxis protein chew | TM1040_RS01655 | Not Available | + | 247832 - 249418 | 58779.9 |
| is3-like element issisp1 family transposase | TM1040_RS01665 | Not Available | + | 249743 - 250839 | 42579.2 |
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS20585 | Not Available | + | 250941 - 251102 | 6351.64 |
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS20590 | Not Available | + | 251180 - 251508 | 12637.2 |
| cbs domain-containing protein | TM1040_RS01675 | Not Available | - | 251761 - 252285 | 18927.8 |
| hypothetical protein | TM1040_RS01680 | Not Available | + | 252364 - 252546 | 6587.32 |
| abc transporter permease | TM1040_RS01685 | Not Available | - | 252601 - 253611 | 34952.5 |
| sugar abc transporter atp-binding protein | TM1040_RS01690 | Not Available | - | 253608 - 255110 | 54287.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.