Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphate/phosphite/phosphonate abc transporter substrate-binding protein | TM1040_RS01595 | Not Available | + | 234200 - 235180 | 34914.6 |
| phosphonate abc transporter atp-binding protein | TM1040_RS01600 | Not Available | + | 235287 - 236060 | 28651.6 |
| phosphonate abc transporter, permease protein phne | TM1040_RS01605 | Not Available | + | 236057 - 236863 | 28652.7 |
| phosphonate abc transporter, permease protein phne | TM1040_RS01610 | Not Available | + | 236860 - 237690 | 30091.4 |
| dsba family protein | TM1040_RS01615 | Not Available | - | 237883 - 238554 | 24695.6 |
| hypothetical protein | TM1040_RS01620 | Not Available | - | 238624 - 239436 | 29163.7 |
| glutathione s-transferase family protein | TM1040_RS01625 | Not Available | - | 239499 - 240464 | 36360.0 |
| lysr family transcriptional regulator | TM1040_RS01630 | Not Available | + | 240577 - 241494 | 33273.9 |
| hypothetical protein | TM1040_RS01635 | Not Available | + | 242356 - 242763 | 14174.9 |
| pas domain s-box protein | TM1040_RS01640 | Not Available | + | 243791 - 246433 | 97117.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.