Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ardc family protein | TM1040_RS00100 | Not Available | + | 27852 - 28736 | 32925.0 |
| duf4394 domain-containing protein | TM1040_RS00105 | Not Available | - | 29156 - 30001 | 29191.3 |
| peptide-methionine (r)-s-oxide reductase msrb | TM1040_RS00110 | Not Available | - | 30047 - 30502 | 16681.7 |
| fasciclin domain-containing protein | TM1040_RS00115 | Not Available | - | 30573 - 31124 | 18729.4 |
| anti-sigma factor domain-containing protein | TM1040_RS00120 | Not Available | - | 31246 - 31932 | 23681.1 |
| sigma-70 family rna polymerase sigma factor | TM1040_RS00125 | Not Available | - | 31929 - 32483 | 20763.4 |
| hint domain-containing protein | TM1040_RS20535 | Not Available | + | 33104 - 35482 | 83332.7 |
| hypothetical protein | TM1040_RS00135 | Not Available | + | 35844 - 36596 | 28099.3 |
| nucleotide-binding protein | TM1040_RS00140 | Not Available | - | 37024 - 37380 | 12929.6 |
| thermonuclease family protein | TM1040_RS00145 | Not Available | + | 38402 - 38752 | 12776.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.