Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pdc sensor domain-containing protein | TM1040_RS01395 | Not Available | + | 186865 - 187434 | 20070.6 |
| methyl-accepting chemotaxis protein | TM1040_RS01400 | Not Available | + | 187476 - 189320 | 64906.6 |
| trap transporter substrate-binding protein dctp | TM1040_RS01405 | Not Available | + | 190067 - 191065 | 36647.3 |
| trap transporter small permease | TM1040_RS01410 | Not Available | + | 191222 - 191779 | 20852.2 |
| trap transporter large permease | TM1040_RS01415 | Not Available | + | 191776 - 193065 | 45224.0 |
| dihydrodipicolinate synthase family protein | TM1040_RS01420 | Not Available | + | 193350 - 194309 | 34702.4 |
| proline racemase family protein | TM1040_RS01425 | Not Available | + | 194300 - 195226 | 32051.1 |
| nad(p)/fad-dependent oxidoreductase | TM1040_RS01430 | Not Available | + | 195292 - 196530 | 45059.9 |
| trans-3-hydroxy-l-proline dehydratase | TM1040_RS01435 | Not Available | + | 196546 - 197571 | 36652.6 |
| hypothetical protein | TM1040_RS01440 | Not Available | - | 197964 - 198293 | 12562.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.