Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | + | 173192 - 173306 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 173550 - 176382 | Not Available |
| Trna-ala | Not Available | Not Available | + | 176932 - 177007 | Not Available |
| Trna-ile | Not Available | Not Available | + | 177073 - 177149 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | + | 177290 - 178751 | Not Available |
| lysr family transcriptional regulator | TM1040_RS01370 | Not Available | - | 179563 - 180438 | 32276.5 |
| duf1330 domain-containing protein | TM1040_RS01375 | Not Available | + | 180535 - 180816 | 9740.56 |
| formate dehydrogenase subunit alpha | TM1040_RS01380 | Not Available | - | 181083 - 183857 | 101539.0 |
| nad(p)h-dependent oxidoreductase subunit e | TM1040_RS01385 | Not Available | - | 183861 - 185549 | 61581.3 |
| lysr family transcriptional regulator | TM1040_RS01390 | Not Available | - | 185663 - 186550 | 32418.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.