Ruegeria sp. TM1040

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. TM1040. This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. TM1040
StrainTM1040

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Pfiesteria piscicida
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhototroph
PathogenicityNot Available

Genome Summary

Ruegeria sp. TM1040

Accession NumberNC_008043.1

Gene Summary

Adenine Count

167632 bp

Thymine Count

166322 bp

Guanine Count

242456 bp

Cytosine Count

245378 bp

Genome Length

821788 bp

Protein-coding Genes

731 genes

Non-Coding Genes

27 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
doda-type extradiol aromatic ring-opening family dioxygenaseTM1040_RS01245Not Available-149646 - 15044028878.2
duf1244 domain-containing proteinTM1040_RS01250Not Available-150625 - 15095712706.9
calcium/sodium antiporterTM1040_RS01255Not Available+151141 - 15212433022.4
crtac1 family proteinTM1040_RS01260Not Available-152144 - 15370955966.1
rok family transcriptional regulatorTM1040_RS01265Not Available-153696 - 15491043576.5
d-xylose abc transporter substrate-binding proteinTM1040_RS01270Not Available+155096 - 15612435391.4
sugar abc transporter permeaseTM1040_RS01275Not Available+156210 - 15750846029.5
atp-binding cassette domain-containing proteinTM1040_RS01280Not Available+157508 - 15829928244.2
methyl-accepting chemotaxis proteinTM1040_RS01285Not Available+158482 - 16073179028.8
abc transporter substrate-binding proteinTM1040_RS01290Not Available+161441 - 16260140100.1

Displaying genes 251 – 260 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites