Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hint domain-containing protein | TM1040_RS01190 | Not Available | + | 139953 - 140921 | 35578.4 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | TM1040_RS01195 | Not Available | - | 140996 - 141958 | 34876.9 |
| gyri-like domain-containing protein | TM1040_RS01200 | Not Available | + | 142179 - 143012 | 30379.0 |
| lyse family translocator | TM1040_RS01205 | Not Available | - | 143129 - 143731 | 21437.6 |
| lrp/asnc family transcriptional regulator | TM1040_RS01210 | Not Available | + | 143808 - 144260 | 16604.0 |
| voc family protein | TM1040_RS01220 | Not Available | + | 144875 - 145243 | 13677.5 |
| l-malyl-coa/beta-methylmalyl-coa lyase | TM1040_RS01225 | Not Available | - | 145368 - 146330 | 34224.6 |
| n-acetyltransferase dgcn | TM1040_RS01230 | Not Available | + | 146638 - 147639 | 35672.9 |
| n-acetyl-d-glu racemase dgca | TM1040_RS01235 | Not Available | + | 147745 - 148710 | 34382.3 |
| d-amino-acid transaminase | TM1040_RS01240 | Not Available | + | 148721 - 149581 | 31583.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.