Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | TM1040_RS00050 | Not Available | + | 14155 - 14565 | 15295.3 |
| gsu2403 family nucleotidyltransferase fold protein | TM1040_RS00055 | Not Available | - | 15000 - 16016 | 36985.3 |
| replication initiator protein a | TM1040_RS00060 | Not Available | - | 16148 - 17152 | 37587.3 |
| aaa family atpase | TM1040_RS00065 | Not Available | + | 17636 - 19045 | 52148.6 |
| parb/repb/spo0j family partition protein | TM1040_RS00070 | Not Available | + | 19119 - 20249 | 40948.6 |
| udp-glucose dehydrogenase family protein | TM1040_RS00075 | Not Available | - | 20354 - 21658 | 46943.4 |
| gdp-mannose 4,6-dehydratase | TM1040_RS00080 | Not Available | - | 22480 - 23481 | 36593.7 |
| Trna-thr | Not Available | Not Available | + | 23609 - 23684 | Not Available |
| helix-turn-helix domain-containing protein | TM1040_RS00090 | Not Available | - | 24265 - 24642 | 14532.2 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | TM1040_RS00095 | Not Available | - | 25175 - 26635 | 53068.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.