Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aspartate carbamoyltransferase catalytic subunit | TM1040_RS00730 | Not Available | + | 39746 - 40705 | 35415.1 |
| hypothetical protein | TM1040_RS00735 | Not Available | + | 40711 - 41244 | 19121.4 |
| dihydroorotase | TM1040_RS00740 | Not Available | + | 41351 - 42661 | 46659.2 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | TM1040_RS00745 | Not Available | + | 42661 - 43269 | 20733.2 |
| yhs domain-containing (seleno)protein | TM1040_RS00750 | Not Available | + | 43540 - 44025 | 17617.3 |
| hypothetical protein | TM1040_RS00755 | Not Available | - | 44125 - 44379 | 8809.31 |
| glutamate--cysteine ligase | TM1040_RS00760 | Not Available | - | 44581 - 45951 | 50779.6 |
| hypothetical protein | TM1040_RS00765 | Not Available | - | 46057 - 46584 | 19166.4 |
| gnat family n-acetyltransferase | TM1040_RS00770 | Not Available | - | 46581 - 47450 | 31472.5 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | TM1040_RS00775 | Not Available | - | 47450 - 48190 | 26905.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.