Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose 3,5-epimerase | TM1040_RS00475 | Not Available | - | 115225 - 115773 | 20228.0 |
| sugar kinase | TM1040_RS00480 | Not Available | - | 116076 - 116963 | 31261.2 |
| glucuronate isomerase | TM1040_RS00485 | Not Available | - | 116963 - 118360 | 51812.7 |
| mannitol dehydrogenase family protein | TM1040_RS00490 | Not Available | - | 118357 - 119772 | 50930.3 |
| tim-barrel domain-containing protein | TM1040_RS00495 | Not Available | - | 119769 - 122123 | 88578.8 |
| trap transporter large permease | TM1040_RS00500 | Not Available | - | 122123 - 123424 | 44795.2 |
| trap transporter small permease | TM1040_RS00505 | Not Available | - | 123436 - 123951 | 18647.4 |
| trap transporter substrate-binding protein | TM1040_RS00510 | Not Available | + | 124211 - 125185 | 34921.2 |
| glycoside hydrolase family 2 protein | TM1040_RS00515 | Not Available | + | 125204 - 127015 | 68736.8 |
| fcd domain-containing protein | TM1040_RS00520 | Not Available | + | 127012 - 127743 | 27667.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.