Ruegeria sp. TM1040

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. TM1040. This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. TM1040
StrainTM1040

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Pfiesteria piscicida
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhototroph
PathogenicityNot Available

Genome Summary

Ruegeria sp. TM1040

Accession NumberNC_008043.1

Gene Summary

Adenine Count

167632 bp

Thymine Count

166322 bp

Guanine Count

242456 bp

Cytosine Count

245378 bp

Genome Length

821788 bp

Protein-coding Genes

731 genes

Non-Coding Genes

27 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dtdp-4-dehydrorhamnose 3,5-epimeraseTM1040_RS00475Not Available-115225 - 11577320228.0
sugar kinaseTM1040_RS00480Not Available-116076 - 11696331261.2
glucuronate isomeraseTM1040_RS00485Not Available-116963 - 11836051812.7
mannitol dehydrogenase family proteinTM1040_RS00490Not Available-118357 - 11977250930.3
tim-barrel domain-containing proteinTM1040_RS00495Not Available-119769 - 12212388578.8
trap transporter large permeaseTM1040_RS00500Not Available-122123 - 12342444795.2
trap transporter small permeaseTM1040_RS00505Not Available-123436 - 12395118647.4
trap transporter substrate-binding proteinTM1040_RS00510Not Available+124211 - 12518534921.2
glycoside hydrolase family 2 proteinTM1040_RS00515Not Available+125204 - 12701568736.8
fcd domain-containing proteinTM1040_RS00520Not Available+127012 - 12774327667.8

Displaying genes 101 – 110 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites