Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf6447 family protein | TM1040_RS00425 | Not Available | - | 105732 - 105923 | 6960.14 |
| sis domain-containing protein | TM1040_RS00430 | Not Available | - | 106169 - 107140 | 33862.3 |
| ycii family protein | TM1040_RS00435 | Not Available | + | 107450 - 107809 | 12959.5 |
| rna polymerase sigma factor | TM1040_RS00440 | Not Available | + | 107815 - 109062 | 45799.2 |
| substrate-binding periplasmic protein | TM1040_RS00445 | Not Available | + | 109117 - 109884 | 27384.4 |
| glycosyltransferase family 4 protein | TM1040_RS00450 | Not Available | - | 109942 - 111195 | 46823.4 |
| glucose-1-phosphate thymidylyltransferase rfba | TM1040_RS00455 | Not Available | - | 111206 - 112078 | 31627.8 |
| dtdp-4-dehydrorhamnose reductase | TM1040_RS00460 | Not Available | - | 112075 - 112920 | 29707.4 |
| dtdp-glucose 4,6-dehydratase | TM1040_RS00465 | Not Available | - | 112986 - 114038 | 38811.5 |
| acyltransferase family protein | TM1040_RS19640 | Not Available | - | 114096 - 115220 | 41914.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.