Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | TM1040_RS04155 | Not Available | + | 796938 - 797849 | 31201.7 |
| ydch family protein | TM1040_RS19960 | Not Available | - | 797974 - 798141 | 6505.94 |
| trna1(val) (adenine(37)-n6)-methyltransferase | TM1040_RS04160 | Not Available | - | 798374 - 799162 | 28123.9 |
| duf2007 domain-containing protein | TM1040_RS04165 | Not Available | - | 799155 - 799376 | 8032.68 |
| polyprenyl synthetase family protein | TM1040_RS04170 | Not Available | + | 799434 - 800444 | 36520.7 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | TM1040_RS04175 | Not Available | - | 800506 - 801330 | 28603.1 |
| tetratricopeptide repeat protein | TM1040_RS04180 | Not Available | - | 801317 - 803035 | 63004.4 |
| electron transfer flavoprotein-ubiquinone oxidoreductase | TM1040_RS04185 | Not Available | - | 803160 - 804809 | 59591.0 |
| redox-sensitive transcriptional activator soxr | TM1040_RS04190 | Not Available | - | 805045 - 805500 | 17034.5 |
| voc family protein | TM1040_RS04195 | Not Available | + | 805646 - 806026 | 13864.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.