Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribulose-phosphate 3-epimerase | TM1040_RS04025 | Not Available | + | 769037 - 769717 | 23821.7 |
| paai family thioesterase | TM1040_RS04030 | Not Available | - | 769944 - 770234 | 10086.9 |
| tm-1-like atp-binding domain-containing protein | TM1040_RS04035 | Not Available | - | 770332 - 771564 | 43741.5 |
| aldehyde dehydrogenase | TM1040_RS19955 | Not Available | - | 771666 - 773132 | 50667.6 |
| tripartite tricarboxylate transporter permease | TM1040_RS04040 | Not Available | - | 773015 - 774634 | 57650.6 |
| tripartite tricarboxylate transporter tctb family protein | TM1040_RS04045 | Not Available | - | 774662 - 775192 | 20272.4 |
| tripartite tricarboxylate transporter substrate binding protein | TM1040_RS04050 | Not Available | - | 775296 - 776240 | 32973.0 |
| iclr family transcriptional regulator | TM1040_RS04055 | Not Available | + | 776456 - 777235 | 27532.0 |
| aspartate aminotransferase family protein | TM1040_RS04060 | Not Available | + | 777265 - 778632 | 48685.0 |
| fkbm family methyltransferase | TM1040_RS04065 | Not Available | - | 778782 - 779528 | 27007.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.