Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p-lyase phnj | TM1040_RS03975 | Not Available | - | 759858 - 760739 | 32901.9 |
| carbon-phosphorus lyase complex subunit phni | TM1040_RS03980 | Not Available | - | 760854 - 761957 | 40861.3 |
| phosphonate c-p lyase system protein phnh | TM1040_RS03985 | Not Available | - | 761962 - 762537 | 20275.2 |
| phosphonate c-p lyase system protein phng | TM1040_RS03990 | Not Available | - | 762537 - 762989 | 16323.6 |
| phosphonate metabolism transcriptional regulator phnf | TM1040_RS03995 | Not Available | + | 763112 - 763834 | 26160.2 |
| chloramphenicol acetyltransferase | TM1040_RS04000 | Not Available | - | 763884 - 764498 | 22515.4 |
| phosphonate abc transporter, permease protein phne | TM1040_RS04005 | Not Available | - | 764648 - 765967 | 48771.1 |
| phosphonate abc transporter, permease protein phne | TM1040_RS04010 | Not Available | - | 765971 - 766849 | 31222.4 |
| phosphonate abc transporter substrate-binding protein | TM1040_RS04015 | Not Available | - | 766961 - 767863 | 32030.9 |
| phosphonate abc transporter atp-binding protein | TM1040_RS04020 | Not Available | - | 767931 - 768749 | 29940.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.