Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 4 protein | TM1040_RS00350 | Not Available | + | 76954 - 78234 | 47352.5 |
| glycosyltransferase | TM1040_RS00355 | Not Available | - | 78296 - 79729 | 54397.9 |
| hlyd family type i secretion periplasmic adaptor subunit | TM1040_RS00360 | Not Available | - | 79812 - 81116 | 48254.5 |
| type i secretion system permease/atpase | TM1040_RS00365 | Not Available | - | 81194 - 82906 | 60918.2 |
| transposase | TM1040_RS19825 | Not Available | + | 83156 - 83364 | 7524.1 |
| transposase | TM1040_RS20115 | Not Available | + | 83805 - 84044 | 8787.41 |
| duf6447 family protein | TM1040_RS00375 | Not Available | - | 84226 - 84423 | 6906.28 |
| class i sam-dependent methyltransferase | TM1040_RS00380 | Not Available | - | 84443 - 85978 | 56748.6 |
| duf4214 domain-containing protein | TM1040_RS00385 | Not Available | - | 86070 - 89450 | 108937.0 |
| duf4214 domain-containing protein | TM1040_RS19835 | Not Available | - | 89462 - 89635 | 6223.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.