Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase family protein | TM1040_RS03875 | Not Available | + | 734296 - 737715 | 124301.0 |
| tetr/acrr family transcriptional regulator | TM1040_RS03880 | Not Available | - | 737812 - 738486 | 25768.8 |
| abc transporter atp-binding protein | TM1040_RS03885 | Not Available | + | 738877 - 740649 | 64956.9 |
| abc transporter substrate-binding protein | TM1040_RS03890 | Not Available | + | 740642 - 742561 | 71924.7 |
| abc transporter permease | TM1040_RS03895 | Not Available | + | 742561 - 743589 | 37782.3 |
| abc transporter permease | TM1040_RS03900 | Not Available | + | 743586 - 744743 | 42957.4 |
| coa transferase | TM1040_RS03905 | Not Available | + | 744740 - 746095 | 47973.5 |
| mechanosensitive ion channel family protein | TM1040_RS03910 | Not Available | - | 746168 - 748522 | 86517.4 |
| glycosyltransferase family protein | TM1040_RS03915 | Not Available | + | 748946 - 750166 | 44498.2 |
| glycosyltransferase family 4 protein | TM1040_RS03920 | Not Available | + | 750163 - 751407 | 45168.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.