Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | TM1040_RS03825 | Not Available | - | 723351 - 724298 | 35447.3 |
| helix-turn-helix transcriptional regulator | TM1040_RS03830 | Not Available | + | 724386 - 725099 | 26350.9 |
| zinc-binding dehydrogenase | TM1040_RS03835 | Not Available | + | 725233 - 726333 | 37635.3 |
| mandelate racemase/muconate lactonizing enzyme family protein | TM1040_RS03840 | Not Available | + | 726497 - 727729 | 44404.9 |
| arsr/smtb family transcription factor | TM1040_RS03845 | Not Available | + | 727935 - 728249 | 11263.7 |
| fumarylacetoacetate hydrolase family protein | TM1040_RS03850 | Not Available | - | 728286 - 729134 | 30169.9 |
| abc transporter transmembrane domain-containing protein | TM1040_RS03855 | Not Available | - | 729194 - 732163 | 110315.0 |
| duf3307 domain-containing protein | TM1040_RS03860 | Not Available | + | 732480 - 732869 | 14661.1 |
| type 1 glutamine amidotransferase family protein | TM1040_RS03865 | Not Available | - | 732994 - 733584 | 20257.4 |
| lrp/asnc family transcriptional regulator | TM1040_RS03870 | Not Available | - | 733684 - 734142 | 17083.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.