Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | TM1040_RS03725 | Not Available | + | 705749 - 706723 | 36230.8 |
| sulfur carrier protein this | TM1040_RS03730 | Not Available | + | 706707 - 706901 | 6643.95 |
| thiazole synthase | TM1040_RS03735 | Not Available | + | 706904 - 707674 | 27026.8 |
| thiamine phosphate synthase | TM1040_RS03740 | Not Available | + | 707671 - 708267 | 22298.9 |
| hesa/moeb/thif family protein | TM1040_RS03745 | Not Available | + | 708264 - 709220 | 33583.7 |
| abc transporter substrate-binding protein | TM1040_RS03750 | Not Available | + | 709241 - 710176 | 33808.4 |
| thiaminase ii | TM1040_RS03755 | Not Available | + | 710173 - 710850 | 24843.5 |
| abc transporter atp-binding protein | TM1040_RS03760 | Not Available | + | 710847 - 711575 | 25622.2 |
| abc transporter permease | TM1040_RS03765 | Not Available | + | 711572 - 712309 | 26479.6 |
| biotin transporter bioy | TM1040_RS03770 | Not Available | - | 712417 - 712956 | 18087.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.