Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trap transporter small permease subunit | TM1040_RS03675 | Not Available | - | 697562 - 698059 | 18362.1 |
| trap transporter substrate-binding protein | TM1040_RS03680 | Not Available | - | 698127 - 699212 | 38912.3 |
| gntr family transcriptional regulator | TM1040_RS03685 | Not Available | + | 699414 - 700115 | 26874.2 |
| crp/fnr family transcriptional regulator | TM1040_RS03690 | Not Available | + | 700125 - 700790 | 24468.2 |
| ygap-like transmembrane domain | TM1040_RS03695 | Not Available | + | 700886 - 701098 | 7638.91 |
| yeee/yede family protein | TM1040_RS03700 | Not Available | + | 701101 - 701532 | 14381.2 |
| duf6691 family protein | TM1040_RS03705 | Not Available | + | 701537 - 701965 | 15102.8 |
| mbl fold metallo-hydrolase | TM1040_RS03710 | Not Available | + | 701992 - 702876 | 32210.4 |
| sulp family inorganic anion transporter | TM1040_RS03715 | Not Available | + | 702946 - 704712 | 62114.5 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | TM1040_RS03720 | Not Available | + | 704949 - 705752 | 27042.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.