Ruegeria sp. TM1040

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. TM1040. This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. TM1040
StrainTM1040

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Pfiesteria piscicida
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhototroph
PathogenicityNot Available

Genome Summary

Ruegeria sp. TM1040

Accession NumberNC_008043.1

Gene Summary

Adenine Count

167632 bp

Thymine Count

166322 bp

Guanine Count

242456 bp

Cytosine Count

245378 bp

Genome Length

821788 bp

Protein-coding Genes

731 genes

Non-Coding Genes

27 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
aldehyde dehydrogenaseTM1040_RS03575Not Available-677733 - 67925355359.1
helix-turn-helix domain-containing proteinTM1040_RS03580Not Available-679401 - 68036034012.2
phenylalanine--trna ligase subunit betaTM1040_RS03585Not Available+680579 - 68297585914.4
ytoq family proteinTM1040_RS03590Not Available+683214 - 68366316292.2
gnat family n-acetyltransferaseTM1040_RS03595Not Available+683660 - 68419019976.9
hypothetical proteinTM1040_RS03600Not Available+684305 - 68493122948.6
mechanosensitive ion channel family proteinTM1040_RS03605Not Available-684940 - 68574628876.0
alanine dehydrogenaseTM1040_RS03610Not Available-685988 - 68711238949.1
lrp/asnc family transcriptional regulatorTM1040_RS03615Not Available+687251 - 68771217020.6
polyphosphate kinase 2TM1040_RS03620Not Available+687919 - 68883636604.8

Displaying genes 721 – 730 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites