Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase | TM1040_RS03575 | Not Available | - | 677733 - 679253 | 55359.1 |
| helix-turn-helix domain-containing protein | TM1040_RS03580 | Not Available | - | 679401 - 680360 | 34012.2 |
| phenylalanine--trna ligase subunit beta | TM1040_RS03585 | Not Available | + | 680579 - 682975 | 85914.4 |
| ytoq family protein | TM1040_RS03590 | Not Available | + | 683214 - 683663 | 16292.2 |
| gnat family n-acetyltransferase | TM1040_RS03595 | Not Available | + | 683660 - 684190 | 19976.9 |
| hypothetical protein | TM1040_RS03600 | Not Available | + | 684305 - 684931 | 22948.6 |
| mechanosensitive ion channel family protein | TM1040_RS03605 | Not Available | - | 684940 - 685746 | 28876.0 |
| alanine dehydrogenase | TM1040_RS03610 | Not Available | - | 685988 - 687112 | 38949.1 |
| lrp/asnc family transcriptional regulator | TM1040_RS03615 | Not Available | + | 687251 - 687712 | 17020.6 |
| polyphosphate kinase 2 | TM1040_RS03620 | Not Available | + | 687919 - 688836 | 36604.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.