Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS03525 | Not Available | + | 665043 - 665885 | 30576.8 |
| response regulator | TM1040_RS03530 | Not Available | + | 665882 - 668194 | 84778.6 |
| metal abc transporter permease | TM1040_RS03535 | Not Available | - | 668225 - 669037 | 27887.0 |
| metal abc transporter atp-binding protein | TM1040_RS03540 | Not Available | - | 669034 - 669783 | 26842.2 |
| transcriptional repressor | TM1040_RS03545 | Not Available | - | 669789 - 670259 | 17379.9 |
| zinc abc transporter substrate-binding protein | TM1040_RS03550 | Not Available | + | 670359 - 671495 | 40328.7 |
| homocysteine s-methyltransferase family protein | TM1040_RS03555 | Not Available | + | 671764 - 672813 | 37405.0 |
| methionine synthase | TM1040_RS03560 | Not Available | + | 672806 - 675547 | 101705.0 |
| thiol-disulfide oxidoreductase dcc family protein | TM1040_RS03565 | Not Available | + | 675641 - 676090 | 17098.8 |
| sdr family oxidoreductase | TM1040_RS03570 | Not Available | + | 676087 - 677670 | 56899.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.